JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Click on file's name to see full metadata. Links in ucsc_db go to the Genome Browser.
Search     
117 files found. Download 117 Files

Clear All

species
 Homo sapiens (87)
 Danio rerio (22)
 Mus musculus (8)
assay
 sc-RNA-seq (53)
 Perturb-seq (18)
 sn-RNA-seq (15)
 n/a (12)
 sc-ATAC-seq (11)
 WGS (3)
 long-RNA-seq (3)
 sleep-wake (1)
 visual-startle (1)
format
 expression_matrix (31)
 tsv (25)
 unknown (16)
 csv (12)
 fastq (11)
 text (7)
 bigBed (2)
 bigWig (2)
 fasta (2)
 vcf (2)
 bam (1)
 gtf (1)
 html (1)
 jpg (1)
 kallisto_abundance (1)
 pdf (1)
 png (1)
output
 count_matrix (36)
 n/a (12)
 barcode (10)
 reads (9)
 perturbation_on_gene_effects (6)
 cellranger_atac_metadata (5)
 feature_table (5)
 format_table (5)
 seurat_rds (5)
 snap_file (5)
 perturbation_by_gene_design_matrix (4)
 behavioural_test_results (3)
 plus strand unique map (2)
  (1)
 CNV (1)
 cell_type_read_counts (1)
 filtered_snap_file (1)
 geneMatrix (1)
 levels (1)
 reads per gene (1)
See 3 More
organ_anatomical_name
 n/a (92)
 brain (16)
 heart (5)
 pancreas (1)
 prostate (1)
 skin (1)
 spleen (1)
lab
 nowakowski (27)
 hoffman (22)
 brennand (18)
 farhi (18)
 quake (13)
 test (10)
 snyder (3)
 jones (2)
 belmonte (1)
 bruneau (1)
 fan (1)
 linnarsson (1)
data_set_id
 nowakowskiScATACseqBrain (27)
 hoffmanAutismZebrafish (22)
 brennandNRXN1Splicing (18)
 farhiCompressedPerturbseq (18)
 quakeBrainGeo1 (12)
 miniMouse (6)
 replicaTest (4)
 snyderCardIps1 (3)
 jonesYap (2)
 belmonteMouseDnmt3a (1)
 bruneauTbx5 (1)
 fanIcf1 (1)
 linnarsson1stTrimesterBrain (1)
 quakeTumorProfiling1 (1)
biosample_cell_type
 n/a (105)
 hybrid (5)
 oligodendrocyte (3)
 oligodendrocyte progenitor cell (2)
 cfDNA (1)
 naïve T cell (1)
sample_label
 n/a (101)
 hippocampus - healthy tissue from epileptic patient (5)
 temporal lobe cortex - healthy tissue from epileptic patient (5)
 ChIR + Act A 24h WT (2)
 HCM iPSC WGS-seq (2)
 WT doxy naive T cell (1)
 mouse cfDNA WGS (1)
file_name file_size ucsc_db species assay format output organ_anatomical_name lab data_set_id biosample_cell_type sample_label
SCHb000AGF.csv.gz 155 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AGE.csv.gz 154 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AGD.csv.gz 152 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AGC.csv.gz 152 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AGB.csv.gz 155 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AGA.csv.gz 154 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFZ.csv.gz 150 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFY.csv.gz 154 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFX.csv.gz 152 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFW.csv.gz 153 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFV.csv.gz 156 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFU.csv.gz 155 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFT.csv.gz 154 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFS.csv.gz 148 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFR.csv.gz 152 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFQ.csv.gz 155 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFP.csv.gz 152 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFO.csv.gz 153 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AFN.csv.gz 151 KB danRer10 Danio rerio sc-RNA-seq expression_matrix count_matrix hoffman hoffmanAutismZe...
SCHb000AGR.tsv 59 KB danRer10 Danio rerio visual-startle tsv behavioural_tes... hoffman hoffmanAutismZe...
SCHb000AGQ.tsv 65 KB danRer10 Danio rerio sleep-wake tsv behavioural_tes... hoffman hoffmanAutismZe...
SCHb000AGP.tsv 1 KB danRer10 Danio rerio tsv behavioural_tes... hoffman hoffmanAutismZe...
SCHb000AHS.txt.gz 324 KB hg38 Homo sapiens Perturb-seq text perturbation_by... farhi farhiCompressed...
SCHb000AHR.csv.gz 54 MB hg38 Homo sapiens Perturb-seq csv perturbation_on... farhi farhiCompressed...
SCHb000AHQ.rds.gz 354 MB hg38 Homo sapiens Perturb-seq unknown seurat_rds farhi farhiCompressed...
SCHb000AHP.h5ad.gz 348 MB hg38 Homo sapiens Perturb-seq unknown count_matrix farhi farhiCompressed...
SCHb000AHO.txt.gz 748 KB hg38 Homo sapiens Perturb-seq text perturbation_by... farhi farhiCompressed...
SCHb000AHN.csv.gz 64 MB hg38 Homo sapiens Perturb-seq csv perturbation_on... farhi farhiCompressed...
SCHb000AHM.rds.gz 1 GB hg38 Homo sapiens Perturb-seq unknown seurat_rds farhi farhiCompressed...
SCHb000AHL.h5ad.gz 1 GB hg38 Homo sapiens Perturb-seq unknown count_matrix farhi farhiCompressed...
SCHb000AHK.csv.gz 64 MB hg38 Homo sapiens Perturb-seq csv perturbation_on... farhi farhiCompressed...
SCHb000AHX.txt.gz 590 KB hg38 Homo sapiens Perturb-seq text perturbation_by... farhi farhiCompressed...
SCHb000AHW.csv.gz 68 MB hg38 Homo sapiens Perturb-seq csv perturbation_on... farhi farhiCompressed...
SCHb000AHV.rds.gz 1 GB hg38 Homo sapiens Perturb-seq unknown seurat_rds farhi farhiCompressed...
SCHb000AHU.h5ad.gz 1 GB hg38 Homo sapiens Perturb-seq unknown count_matrix farhi farhiCompressed...
SCHb000AHT.csv.gz 67 MB hg38 Homo sapiens Perturb-seq csv perturbation_on... farhi farhiCompressed...
SCHb000AIB.txt.gz 298 KB hg38 Homo sapiens Perturb-seq text perturbation_by... farhi farhiCompressed...
SCHb000AIA.csv.gz 57 MB hg38 Homo sapiens Perturb-seq csv perturbation_on... farhi farhiCompressed...
SCHb000AHZ.rds.gz 425 MB hg38 Homo sapiens Perturb-seq unknown seurat_rds farhi farhiCompressed...
SCHb000AHY.h5ad.gz 404 MB hg38 Homo sapiens Perturb-seq unknown count_matrix farhi farhiCompressed...
SCHb000AIC.h5 12 GB hg38 Homo sapiens sc-RNA-seq unknown count_matrix linnarsson linnarsson1stTr...
SCHb000AGX.mtx.gz 48 MB hg38 Homo sapiens sn-RNA-seq expression_matrix count_matrix brennand brennandNRXN1Sp...
SCHb000AGW.tsv.gz 265 KB hg38 Homo sapiens sn-RNA-seq tsv format_table brennand brennandNRXN1Sp...
SCHb000AGV.tsv.gz 23 KB hg38 Homo sapiens sn-RNA-seq tsv barcode brennand brennandNRXN1Sp...
SCHb000AGU.txt.gz 406 KB Homo sapiens text count_matrix brennand brennandNRXN1Sp...
SCHb000AGT.tsv.gz 701 KB Homo sapiens tsv cell_type_read_... brennand brennandNRXN1Sp...
SCHb000AGS.txt.gz 2 MB Homo sapiens text count_matrix brennand brennandNRXN1Sp...
SCHb000AHA.mtx.gz 48 MB hg38 Homo sapiens sn-RNA-seq expression_matrix count_matrix brennand brennandNRXN1Sp...
SCHb000AGZ.tsv.gz 265 KB hg38 Homo sapiens sn-RNA-seq tsv format_table brennand brennandNRXN1Sp...
SCHb000AGY.tsv.gz 26 KB hg38 Homo sapiens sn-RNA-seq tsv barcode brennand brennandNRXN1Sp...
SCHb000AHD.mtx.gz 28 MB hg38 Homo sapiens sn-RNA-seq expression_matrix count_matrix brennand brennandNRXN1Sp...
SCHb000AHC.tsv.gz 265 KB hg38 Homo sapiens sn-RNA-seq tsv format_table brennand brennandNRXN1Sp...
SCHb000AHB.tsv.gz 17 KB hg38 Homo sapiens sn-RNA-seq tsv barcode brennand brennandNRXN1Sp...
SCHb000AHG.mtx.gz 63 MB hg38 Homo sapiens sn-RNA-seq expression_matrix count_matrix brennand brennandNRXN1Sp...
SCHb000AHF.tsv.gz 265 KB hg38 Homo sapiens sn-RNA-seq tsv format_table brennand brennandNRXN1Sp...
SCHb000AHE.tsv.gz 29 KB hg38 Homo sapiens sn-RNA-seq tsv barcode brennand brennandNRXN1Sp...
SCHb000AHJ.mtx.gz 77 MB hg38 Homo sapiens sn-RNA-seq expression_matrix count_matrix brennand brennandNRXN1Sp...
SCHb000AHI.tsv.gz 265 KB hg38 Homo sapiens sn-RNA-seq tsv format_table brennand brennandNRXN1Sp...
SCHb000AHH.tsv.gz 35 KB hg38 Homo sapiens sn-RNA-seq tsv barcode brennand brennandNRXN1Sp...
SCHb000AIF.rds.gz 4 GB Homo sapiens sc-ATAC-seq unknown filtered_snap_file nowakowski nowakowskiScATA...
SCHb000AIE.csv.gz 6 MB Homo sapiens sc-ATAC-seq csv cellranger_atac... nowakowski nowakowskiScATA...
SCHb000AID.snap.gz 770 MB Homo sapiens sc-ATAC-seq unknown snap_file nowakowski nowakowskiScATA...
SCHb000AIH.csv.gz 5 MB Homo sapiens sc-ATAC-seq csv cellranger_atac... nowakowski nowakowskiScATA...
SCHb000AIG.snap.gz 439 MB Homo sapiens sc-ATAC-seq unknown snap_file nowakowski nowakowskiScATA...
SCHb000AIJ.csv.gz 5 MB Homo sapiens sc-ATAC-seq csv cellranger_atac... nowakowski nowakowskiScATA...
SCHb000AII.snap.gz 605 MB Homo sapiens sc-ATAC-seq unknown snap_file nowakowski nowakowskiScATA...
SCHb000AIM.mtx.gz 52 MB Homo sapiens sc-RNA-seq expression_matrix count_matrix nowakowski nowakowskiScATA...
SCHb000AIL.tsv.gz 305 KB Homo sapiens sc-RNA-seq tsv feature_table nowakowski nowakowskiScATA...
SCHb000AIK.tsv.gz 41 KB Homo sapiens sc-RNA-seq tsv barcode nowakowski nowakowskiScATA...
SCHb000AIP.mtx.gz 60 MB Homo sapiens sc-RNA-seq expression_matrix count_matrix nowakowski nowakowskiScATA...
SCHb000AIO.tsv.gz 305 KB Homo sapiens sc-RNA-seq tsv feature_table nowakowski nowakowskiScATA...
SCHb000AIN.tsv.gz 39 KB Homo sapiens sc-RNA-seq tsv barcode nowakowski nowakowskiScATA...
SCHb000AIR.csv.gz 2 MB Homo sapiens sc-ATAC-seq csv cellranger_atac... nowakowski nowakowskiScATA...
SCHb000AIQ.snap.gz 284 MB Homo sapiens sc-ATAC-seq unknown snap_file nowakowski nowakowskiScATA...
SCHb000AIT.csv.gz 3 MB Homo sapiens sc-ATAC-seq csv cellranger_atac... nowakowski nowakowskiScATA...
SCHb000AIS.snap.gz 340 MB Homo sapiens sc-ATAC-seq unknown snap_file nowakowski nowakowskiScATA...
SCHb000AIX.rds.gz 493 MB Homo sapiens sc-RNA-seq unknown seurat_rds nowakowski nowakowskiScATA...
SCHb000AIW.mtx.gz 102 MB Homo sapiens sc-RNA-seq expression_matrix count_matrix nowakowski nowakowskiScATA...
SCHb000AIV.tsv.gz 305 KB Homo sapiens sc-RNA-seq tsv feature_table nowakowski nowakowskiScATA...
SCHb000AIU.tsv.gz 57 KB Homo sapiens sc-RNA-seq tsv barcode nowakowski nowakowskiScATA...
SCHb000AJA.mtx.gz 95 MB Homo sapiens sc-RNA-seq expression_matrix count_matrix nowakowski nowakowskiScATA...
SCHb000AIZ.tsv.gz 305 KB Homo sapiens sc-RNA-seq tsv feature_table nowakowski nowakowskiScATA...
SCHb000AIY.tsv.gz 55 KB Homo sapiens sc-RNA-seq tsv barcode nowakowski nowakowskiScATA...
SCHb000ADL.tsv 6 MB hg38 Homo sapiens sc-RNA-seq kallisto_abundance levels brain quake quakeBrainGeo1 hybrid hippocampus - h...
SCHb000ADK.fast... 115 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 hybrid hippocampus - h...
SCHb000ADJ.fast... 115 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 hybrid hippocampus - h...
SCHb000ADI.fast... 131 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 oligodendrocyte... hippocampus - h...
SCHb000ADH.fast... 130 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 oligodendrocyte... hippocampus - h...
SCHb000ADG.fast... 150 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 hybrid temporal lobe c...
SCHb000ADF.fast... 150 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 hybrid temporal lobe c...
SCHb000ADC.tsv 87 MB hg38 Homo sapiens sc-RNA-seq expression_matrix geneMatrix brain quake quakeBrainGeo1
SCHb000ADB.tsv 201 MB hg38 Homo sapiens sc-RNA-seq expression_matrix transcriptMatrix brain quake quakeBrainGeo1
SCHb000ADE.fast... 144 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 oligodendrocyte temporal lobe c...
SCHb000ADD.fast... 145 MB hg38 Homo sapiens sc-RNA-seq fastq reads brain quake quakeBrainGeo1 oligodendrocyte temporal lobe c...
SCHb000ADA.bam 245 MB hg38 Homo sapiens sc-RNA-seq bam sorted alignments brain quake quakeBrainGeo1 oligodendrocyte temporal lobe c...
SCHb000ACZ.txt 20 KB hg19 Homo sapiens WGS text CNV heart snyder snyderCardIps1 HCM iPSC WGS-seq
SCHb000ACY.pdf 992 KB hg19 Homo sapiens WGS pdf report heart snyder snyderCardIps1 HCM iPSC WGS-seq
SCHb000ACX.html 8 KB hg19 Homo sapiens html heart snyder snyderCardIps1
SCHb000ACW.bigWig 186 MB hg19 Homo sapiens long-RNA-seq bigWig plus strand uni... heart jones jonesYap ChIR + Act A 24...
SCHb000ACV.bigWig 129 MB hg19 Homo sapiens long-RNA-seq bigWig plus strand uni... heart jones jonesYap ChIR + Act A 24...
Displaying page of 2   ⏩   ⏭

Home
UCSC Home
CIRM Home

Stem Cell Hub Help
CESCG Services
CIRM Contact
Stem Cell Hub Contact