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may be accessed at https://cirm.ucsc.edu.
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10 files match
access all
accession SCHb000AGF
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AGF.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 236
file_name SCHb000AGF.csv.gz
file_size 154543
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 6eeb2bbe15cf65b2c88bd7df72c8a905
meta GSM6215039
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215039_gene_count_matrix_dyrk1aWT4.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type wild-type
access all
accession SCHb000AGE
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AGE.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 235
file_name SCHb000AGE.csv.gz
file_size 153567
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 6afd03f32e74ab1eb578cb1913e2b743
meta GSM6215038
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215038_gene_count_matrix_dyrk1aWT2.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type wild-type
access all
accession SCHb000AGD
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AGD.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 234
file_name SCHb000AGD.csv.gz
file_size 152421
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 099b6e33e30aeae31a32a19eddfcb4bb
meta GSM6215037
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215037_gene_count_matrix_dyrk1aWT1.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type wild-type
access all
accession SCHb000AGC
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AGC.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 233
file_name SCHb000AGC.csv.gz
file_size 152030
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 a52a4bd0e170b4bd5b63f22476a8983f
meta GSM6215036
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215036_gene_count_matrix_dyrk1aHET4.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type heterozygous
access all
accession SCHb000AGB
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AGB.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 232
file_name SCHb000AGB.csv.gz
file_size 155144
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 61f05807cccd7c00d2a3389b6495a530
meta GSM6215035
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215035_gene_count_matrix_dyrk1aHET3.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type heterozygous
access all
accession SCHb000AGA
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AGA.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 231
file_name SCHb000AGA.csv.gz
file_size 154040
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 20be9813955b8e03db6730cc03112323
meta GSM6215034
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215034_gene_count_matrix_dyrk1aHET2.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type heterozygous
access all
accession SCHb000AFZ
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AFZ.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 230
file_name SCHb000AFZ.csv.gz
file_size 150199
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 d0323c89abeaa792e073e3eb40a1ea08
meta GSM6215033
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215033_gene_count_matrix_dyrk1aHOM5.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type homozygous
access all
accession SCHb000AFY
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AFY.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 229
file_name SCHb000AFY.csv.gz
file_size 153618
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 a0203b6776e93477126746d808ec866e
meta GSM6215032
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215032_gene_count_matrix_dyrk1aHOM3.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type homozygous
access all
accession SCHb000AFX
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AFX.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 228
file_name SCHb000AFX.csv.gz
file_size 152380
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 c423b3c778a5afc6ef39bf2e97e36434
meta GSM6215031
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215031_gene_count_matrix_dyrk1aHOM2.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type homozygous
access all
accession SCHb000AFW
assay sc-RNA-seq
cdw_file_name /data/cirm/cdw/2024/2/20/SCHb000AFW.csv.gz
data_set_id hoffmanAutismZebrafish
developmental_stage embryo
enriched_in exon
file_id 227
file_name SCHb000AFW.csv.gz
file_size 152710
format expression_matrix
institution Yale School of Medicine
item_count 32021
lab hoffman
lab_geo_library_construction_method NEBNext Single Cell Low Input RNA Library Prep Kit
lab_geo_pmid 36933215
lab_geo_series GSE205578
library_source single cell
md5 457ec8dfc208e8cc4beaf8ae06c0e573
meta GSM6215030
modality transcriptomics
model_organ brain
output count_matrix
sequencing_platform Illumina NovaSeq 6000
species Danio rerio
submit_dir /hive/groups/SSPsyGene/wrangle/hoffmanAutismZebrafish
submit_file_name ./files/GSM6215030_gene_count_matrix_dyrk1aHOM1.csv.gz
target_gene dyrk1a
timecourse_relevance days-post-fertilizitation
timecourse_unit day
timecourse_value 6
ucsc_db danRer10
variant_type homozygous
